working pca_first
This commit is contained in:
Priec
729
hod_1/Cargo.lock
generated
729
hod_1/Cargo.lock
generated
@@ -17,6 +17,17 @@ version = "2.0.1"
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|
||||
"wasm-encoder",
|
||||
"wasm-metadata",
|
||||
"wasmparser",
|
||||
"wit-parser",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "wit-parser"
|
||||
version = "0.244.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "ecc8ac4bc1dc3381b7f59c34f00b67e18f910c2c0f50015669dde7def656a736"
|
||||
dependencies = [
|
||||
"anyhow",
|
||||
"id-arena",
|
||||
"indexmap",
|
||||
"log",
|
||||
"semver",
|
||||
"serde",
|
||||
"serde_derive",
|
||||
"serde_json",
|
||||
"unicode-xid",
|
||||
"wasmparser",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "xml-rs"
|
||||
@@ -2857,8 +3448,140 @@ dependencies = [
|
||||
"syn",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zeroize"
|
||||
version = "1.8.2"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "b97154e67e32c85465826e8bcc1c59429aaaf107c1e4a9e53c8d8ccd5eff88d0"
|
||||
dependencies = [
|
||||
"zeroize_derive",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zeroize_derive"
|
||||
version = "1.4.3"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "85a5b4158499876c763cb03bc4e49185d3cccbabb15b33c627f7884f43db852e"
|
||||
dependencies = [
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zip"
|
||||
version = "0.6.6"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "760394e246e4c28189f19d488c058bf16f564016aefac5d32bb1f3b51d5e9261"
|
||||
dependencies = [
|
||||
"aes",
|
||||
"byteorder",
|
||||
"bzip2 0.4.4",
|
||||
"constant_time_eq 0.1.5",
|
||||
"crc32fast",
|
||||
"crossbeam-utils",
|
||||
"flate2",
|
||||
"hmac",
|
||||
"pbkdf2 0.11.0",
|
||||
"sha1",
|
||||
"time",
|
||||
"zstd 0.11.2+zstd.1.5.2",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zip"
|
||||
version = "8.2.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "b680f2a0cd479b4cff6e1233c483fdead418106eae419dc60200ae9850f6d004"
|
||||
dependencies = [
|
||||
"aes",
|
||||
"bzip2 0.6.1",
|
||||
"constant_time_eq 0.4.2",
|
||||
"crc32fast",
|
||||
"deflate64",
|
||||
"flate2",
|
||||
"getrandom 0.4.2",
|
||||
"hmac",
|
||||
"indexmap",
|
||||
"lzma-rust2",
|
||||
"memchr",
|
||||
"pbkdf2 0.12.2",
|
||||
"ppmd-rust",
|
||||
"sha1",
|
||||
"time",
|
||||
"typed-path",
|
||||
"zeroize",
|
||||
"zopfli",
|
||||
"zstd 0.13.3",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zlib-rs"
|
||||
version = "0.6.3"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "3be3d40e40a133f9c916ee3f9f4fa2d9d63435b5fbe1bfc6d9dae0aa0ada1513"
|
||||
|
||||
[[package]]
|
||||
name = "zmij"
|
||||
version = "1.0.21"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa"
|
||||
|
||||
[[package]]
|
||||
name = "zopfli"
|
||||
version = "0.8.3"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "f05cd8797d63865425ff89b5c4a48804f35ba0ce8d125800027ad6017d2b5249"
|
||||
dependencies = [
|
||||
"bumpalo",
|
||||
"crc32fast",
|
||||
"log",
|
||||
"simd-adler32",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zstd"
|
||||
version = "0.11.2+zstd.1.5.2"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "20cc960326ece64f010d2d2107537f26dc589a6573a316bd5b1dba685fa5fde4"
|
||||
dependencies = [
|
||||
"zstd-safe 5.0.2+zstd.1.5.2",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zstd"
|
||||
version = "0.13.3"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "e91ee311a569c327171651566e07972200e76fcfe2242a4fa446149a3881c08a"
|
||||
dependencies = [
|
||||
"zstd-safe 7.2.4",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zstd-safe"
|
||||
version = "5.0.2+zstd.1.5.2"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "1d2a5585e04f9eea4b2a3d1eca508c4dee9592a89ef6f450c11719da0726f4db"
|
||||
dependencies = [
|
||||
"libc",
|
||||
"zstd-sys",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zstd-safe"
|
||||
version = "7.2.4"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "8f49c4d5f0abb602a93fb8736af2a4f4dd9512e36f7f570d66e65ff867ed3b9d"
|
||||
dependencies = [
|
||||
"zstd-sys",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "zstd-sys"
|
||||
version = "2.0.16+zstd.1.5.7"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748"
|
||||
dependencies = [
|
||||
"cc",
|
||||
"pkg-config",
|
||||
]
|
||||
|
||||
@@ -8,3 +8,5 @@ burn = { version = "0.20.1", default-features = false, features = ["ndarray"] }
|
||||
burn-ndarray = "0.20.1"
|
||||
clap = { version = "4.5.60", features = ["derive"] }
|
||||
ndarray = "0.17.2"
|
||||
npyz = { version = "0.8.4", features = ["npz"] }
|
||||
zip = { version = "8.2.0", features = ["deflate"] }
|
||||
|
||||
@@ -1,63 +1,57 @@
|
||||
use burn::tensor::Tensor;
|
||||
use std::collections::HashMap;
|
||||
use std::fs::File;
|
||||
use std::io::{BufRead, BufReader};
|
||||
use burn::tensor::linalg::diag;
|
||||
use burn::tensor::Shape;
|
||||
|
||||
pub type B = burn_ndarray::NdArray<f64>;
|
||||
|
||||
// Funkcia na načítanie a zarovnanie dát
|
||||
pub fn load_and_align(data_path: &str, model_path: &str) -> (Vec<f64>, Vec<f64>) {
|
||||
let mut counts = HashMap::new();
|
||||
let mut total_count = 0.0;
|
||||
|
||||
let file_p = File::open(data_path).expect("Nepodarilo sa otvoriť dáta");
|
||||
for line in BufReader::new(file_p).lines() {
|
||||
let point = line.unwrap().trim().to_string();
|
||||
if point.is_empty() { continue; }
|
||||
*counts.entry(point).or_insert(0.0) += 1.0;
|
||||
total_count += 1.0;
|
||||
}
|
||||
|
||||
let mut model_map = HashMap::new();
|
||||
let file_q = File::open(model_path).expect("Nepodarilo sa otvoriť model");
|
||||
for line in BufReader::new(file_q).lines() {
|
||||
let l = line.unwrap();
|
||||
let parts: Vec<&str> = l.split('\t').collect();
|
||||
if parts.len() >= 2 {
|
||||
model_map.insert(parts[0].to_string(), parts[1].parse::<f64>().unwrap());
|
||||
}
|
||||
}
|
||||
|
||||
let mut p_vals = Vec::new();
|
||||
let mut q_vals = Vec::new();
|
||||
for (point, count) in counts.iter() {
|
||||
p_vals.push(count / total_count);
|
||||
q_vals.push(*model_map.get(point).unwrap_or(&0.0));
|
||||
}
|
||||
(p_vals, q_vals)
|
||||
fn l2_norm(v: Tensor<B, 1>) -> f64 {
|
||||
v.clone()
|
||||
.mul(v) // element-wise: v_i * v_i
|
||||
.sum() // suma všetkých v_i^2
|
||||
.sqrt() // odmocnina
|
||||
.into_scalar() // na f32
|
||||
}
|
||||
|
||||
pub fn entropy(p: Tensor<B, 1>) -> f64 {
|
||||
let zero_mask = p.clone().equal_elem(0.0);
|
||||
let p_safe = p.clone().mask_fill(zero_mask, 1.0);
|
||||
let terms = p * p_safe.log();
|
||||
-terms.sum().into_scalar()
|
||||
/// Input: [N, 784], Output: [N, 784]
|
||||
pub fn center(x: Tensor<B, 2>) -> Tensor<B, 2> {
|
||||
let mean = x.clone().mean_dim(0);
|
||||
x.sub(mean)
|
||||
}
|
||||
|
||||
pub fn cross_entropy(p: Tensor<B, 1>, q: Tensor<B, 1>) -> f64 {
|
||||
let zero_mask_q = q.clone().equal_elem(0.0);
|
||||
let p_exists = p.clone().greater_elem(0.0);
|
||||
if p_exists.bool_and(zero_mask_q.clone()).any().into_scalar() {
|
||||
return f64::INFINITY;
|
||||
/// Input: [N, 784], Output: [784, 784]
|
||||
pub fn covariance(x: Tensor<B, 2>) -> Tensor<B, 2> {
|
||||
let cen = center(x);
|
||||
let transpose = cen.clone().transpose();
|
||||
let n = cen.dims()[0] as f64;
|
||||
let mul = transpose.matmul(cen);
|
||||
mul.div_scalar(n - 1.0)
|
||||
|
||||
}
|
||||
|
||||
pub fn total_variance(x: Tensor<B, 2>) -> f64 {
|
||||
let cov: Tensor<B, 2> = covariance(x);
|
||||
let diag: Tensor<B, 1> = diag(cov);
|
||||
let sum = diag.sum().into_scalar();
|
||||
sum
|
||||
}
|
||||
|
||||
/// Input: [784, 784], scalar, Output: [784]
|
||||
pub fn power_iteration(cov: Tensor<B, 2>, iterations: usize) -> (Tensor<B, 1>, f64) {
|
||||
let n = cov.dims()[0];
|
||||
let device = cov.device();
|
||||
let mut v: Tensor<B, 1> = Tensor::ones(Shape::new([n]), &device);
|
||||
let mut s: f64 = 0.0;
|
||||
|
||||
for _ in 0..iterations {
|
||||
let v_new_2d = cov.clone().matmul(v.reshape([n, 1]));
|
||||
let v_new = v_new_2d.squeeze::<1>();
|
||||
s = l2_norm(v_new.clone());
|
||||
v = v_new.div_scalar(s);
|
||||
}
|
||||
let q_safe = q.mask_fill(zero_mask_q, 1.0);
|
||||
let terms = p * q_safe.log();
|
||||
-terms.sum().into_scalar()
|
||||
return (v, s);
|
||||
}
|
||||
|
||||
pub fn kl_div2(p: Tensor<B, 1>, q: Tensor<B, 1>) -> f64 {
|
||||
let ce = cross_entropy(p.clone(), q);
|
||||
let e = entropy(p);
|
||||
let result = ce - e;
|
||||
if result < 0.0 { 0.0 } else { result }
|
||||
/// Input: [784, 784], [784], Output: f32
|
||||
pub fn explained_variance(total_var: f64, s: f64) -> f64 {
|
||||
s / total_var
|
||||
}
|
||||
|
||||
@@ -1,30 +1,86 @@
|
||||
use burn::tensor::{backend::Backend, Tensor};
|
||||
use burn::tensor::backend::Backend;
|
||||
use burn::tensor::Tensor;
|
||||
use clap::Parser;
|
||||
// Nahraď 'hod_1' názvom tvojho projektu v Cargo.toml
|
||||
use hod_1::{load_and_align, entropy, cross_entropy, kl_div2, B};
|
||||
use hod_1::{covariance, explained_variance, power_iteration, total_variance, B};
|
||||
use std::fs::File;
|
||||
use std::io::Read;
|
||||
|
||||
#[derive(Parser, Debug)]
|
||||
#[command(author, version, about, long_about = None)]
|
||||
struct Args {
|
||||
#[arg(long = "data_path")]
|
||||
data_path: String,
|
||||
#[arg(long = "examples", default_value = "1024")]
|
||||
examples: usize,
|
||||
#[arg(long = "iterations", default_value = "64")]
|
||||
iterations: usize,
|
||||
}
|
||||
|
||||
#[arg(long = "model_path")]
|
||||
model_path: String,
|
||||
fn load_mnist(examples: usize, device: &<B as Backend>::Device) -> Tensor<B, 2> {
|
||||
let file = File::open("mnist.npz").expect("Cannot open mnist.npz");
|
||||
let mut archive = zip::ZipArchive::new(file).expect("Cannot read zip");
|
||||
|
||||
// Print all available array names so you can see what's inside
|
||||
eprintln!("Arrays in mnist.npz:");
|
||||
for i in 0..archive.len() {
|
||||
eprintln!(" {}", archive.by_index(i).unwrap().name());
|
||||
}
|
||||
|
||||
// Try the most common key names used for MNIST train images
|
||||
let candidates = [
|
||||
"train_images.npy",
|
||||
"train.images.npy",
|
||||
"x_train.npy",
|
||||
"images.npy",
|
||||
];
|
||||
|
||||
let mut bytes = Vec::new();
|
||||
let mut found_name = "";
|
||||
for name in &candidates {
|
||||
if archive.by_name(name).is_ok() {
|
||||
archive
|
||||
.by_name(name)
|
||||
.unwrap()
|
||||
.read_to_end(&mut bytes)
|
||||
.expect("Failed to read entry");
|
||||
found_name = name;
|
||||
break;
|
||||
}
|
||||
}
|
||||
assert!(!bytes.is_empty(), "Could not find train images — check the printed names above and update candidates[]");
|
||||
eprintln!("Loaded from: {found_name}");
|
||||
|
||||
// Parse the .npy header to get the shape
|
||||
let npy = npyz::NpyFile::new(&bytes[..]).expect("Cannot parse npy");
|
||||
let shape = npy.shape().to_vec();
|
||||
eprintln!("Raw array shape: {shape:?}");
|
||||
|
||||
// MNIST is stored as uint8 (0–255); we normalise to [0.0, 1.0]
|
||||
let raw: Vec<u8> = npy.into_vec().expect("Failed to read as u8 — dtype mismatch?");
|
||||
|
||||
let n = examples.min(shape[0] as usize);
|
||||
let pixels = raw.len() / shape[0] as usize; // 784 = 1*28*28, regardless of how axes are ordered
|
||||
|
||||
let data: Vec<f64> = raw[..n * pixels]
|
||||
.iter()
|
||||
.map(|&p| p as f64 / 255.0)
|
||||
.collect();
|
||||
|
||||
eprintln!("Loaded {n} examples, {pixels} pixels each");
|
||||
|
||||
let tensor_data = burn::tensor::TensorData::new(data, [n, pixels]);
|
||||
Tensor::<B, 2>::from_data(tensor_data, device)
|
||||
}
|
||||
|
||||
fn main() {
|
||||
let args = Args::parse();
|
||||
let device = <B as Backend>::Device::default();
|
||||
|
||||
// Použijeme funkciu z lib.rs
|
||||
let (p_vec, q_vec) = load_and_align(&args.data_path, &args.model_path);
|
||||
let x = load_mnist(args.examples, &device);
|
||||
|
||||
let p = Tensor::<B, 1>::from_data(p_vec.as_slice(), &device);
|
||||
let q = Tensor::<B, 1>::from_data(q_vec.as_slice(), &device);
|
||||
let cov = covariance(x.clone());
|
||||
let total_var = total_variance(x.clone());
|
||||
let (_pc, s) = power_iteration(cov, args.iterations);
|
||||
let ev = explained_variance(total_var, s);
|
||||
|
||||
// Výpočty
|
||||
println!("{}", entropy(p.clone()));
|
||||
println!("{}", cross_entropy(p.clone(), q.clone()));
|
||||
println!("{}", kl_div2(p, q));
|
||||
println!("Total variance: {:.2}", total_var);
|
||||
println!("Explained variance: {:.2}%", 100.0 * ev);
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user